Datasets

SPECIES
DIMENSION
MOLECULE
TECHNOLOGY
ORGAN
DISEASE
Human
Brain
Glioblastoma
3.09K
Cell
37
Marker
1
ROI
IMC
2D
Protein
Cell Type
NATURE COMMS, 2022
Human
Breast
Breast Cancer (Ductal carcinoma in situ)
69.5K
Cell
44
Marker
79
ROI
MIBI
2D
Protein
Cell Type
CELL, 2022
Human
Mixed
Cancer
345K
Cell
15
Marker
165
ROI
MIBI
2D
Protein
Cell Type
LABORATORY INVESTIGATION, 2022
Human
Brain
Glioblastoma
2.23K
Spot
6.2K
Gene
3
ROI
Visium
2D
RNA
Cell Type
NATURE COMMS, 2022
Human
Bladder
Bladder Cancer (Muscle-invasive bladder cancer)
598K
Cell
12
Marker
75
ROI
CODEX
2D
Protein
Cell Type
NATURE COMMS, 2021
Human
Tonsil
Normal
192K
Cell
41
Marker
1
ROI
CODEX
2D
Protein
Cell Type
NATURE PROTOCOLS, 2021
Human
Eye
Conjunctival Melanoma
2.1K
Cell
17
Marker
2
ROI
IMC
2D
Protein
Cell Type
BMC OPHTHALMOLOGY, 2021
Mouse
Lung
Lung Cancer
285K
Cell
26
Marker
12
ROI
IMC
2D
Protein
Cell Type
NATURE COMMS, 2021
Human
Lung
COVID-19
664K
Cell
36
Marker
237
ROI
IMC
2D
Protein
Cell Type
NATURE, 2021
Human
Breast
Breast Cancer
108K
Cell
25
Marker
1
ROI
IMC
3D
Protein
Cell Type
NATURE CANCER, 2021
Human
Breast
Breast Cancer
13.8K
Cell
32
Marker
1
ROI
IMC
3D
Protein
Cell Type
NATURE CANCER, 2021
Human
Breast
Breast Cancer
6.46K
Cell
28
Marker
1
ROI
IMC
3D
Protein
Cell Type
NATURE CANCER, 2021
Human
Breast
Breast Cancer
81.2K
Cell
24
Marker
1
ROI
IMC
3D
Protein
Cell Type
NATURE CANCER, 2021
Mouse
Brain-Motor Cortex
Normal
274K
Cell
254
Gene
64
ROI
MERFISH
2D
RNA
Cell Type
NATURE, 2021
Human
Breast
Breast Cancer (Triple Negative Breast Cancer)
190K
Cell
35
Marker
38
ROI
MIBI
2D
Protein
Cell Type
COMMS BIOLOGY, 2021
Mouse
Liver
Normal
21K
Cell
16.9K
Gene
6
ROI
seq-scope
2D
RNA
Cell Type
CELL, 2021
Mouse
Colon
Normal
28.4K
Cell
18.2K
Gene
11
ROI
seq-scope
2D
RNA
Cell Type
CELL, 2021
Human
Breast
Breast Cancer
13.8K
Spot
34K
Gene
12
ROI
Visium
2D
RNA
Cell Type
COMMS BIOLOGY, 2021
Human
Breast
Breast Cancer (HER2-positive breast cancer)
13.6K
Spot
17K
Gene
36
ROI
Visium
2D
RNA
Cell Type
NATURE COMMS, 2021
Mouse
Liver
Normal
8.75K
Spot
9.65K
Gene
12
ROI
Visium
2D
RNA
Cell Type
NATURE COMMS, 2021
Human
Breast
Breast Cancer
15.6K
Spot
22.8K
Gene
6
ROI
Visium
2D
RNA
Cell Type
NATURE GENETICS, 2021
Human
Organoid
Normal
2.04K
Spot
19.2K
Gene
3
ROI
Visium
2D
RNA
Cell Type
NATURE METHODS, 2021
Human
Brain-Dorsolateral prefrontal cortex
Normal
47.7K
Spot
22.4K
Gene
12
ROI
Visium
2D
RNA
Cell Type
NATURE NEUROSCIENCE, 2021
Mouse
Embryo
Normal
122K
Cell
33.5K
Gene
14
ROI
sci-Space
2D
RNA
Cell Type
SCIENCE, 2021
Human
Organoid-Kidney
Normal
1.36K
Spot
14.4K
Gene
3
ROI
Visium
2D
RNA
Cell Type
CELL GENOMICS, 2021
Human
Lung
COVID-19
1.51K
Spot
15.9K
Gene
2
ROI
Visium
2D
RNA
Cell Type
CELL GENOMICS, 2021
Human
Muscle
Soft tissue sarcomas
15.2K
Spot
20.8K
Gene
4
ROI
Visium
2D
RNA
Cell Type
CELL GENOMICS, 2021
Human
Intestine
Ovarian carcinosarcoma (Metastasis to omentum)
16.2K
Spot
20.6K
Gene
4
ROI
Visium
2D
RNA
Cell Type
CELL GENOMICS, 2021
Human
Organoid-Lung
Normal
1.83K
Spot
14.4K
Gene
4
ROI
Visium
2D
RNA
Cell Type
CELL GENOMICS, 2021
Mouse
Brain
Normal
18.4K
Spot
18.3K
Gene
7
ROI
Visium
2D
RNA
Cell Type
CELL GENOMICS, 2021
Human
Skin
Obesity
41.8K
Spot
19K
Gene
15
ROI
Visium
2D
RNA
Cell Type
CELL METABOLISM, 2021
Mouse
Colon-Intestine
Normal
9.33K
Spot
20.6K
Gene
8
ROI
Visium
2D
RNA
Cell Type
CELL, 2021
Human
Liver
Normal
2.27K
Spot
15.8K
Gene
1
ROI
Visium
2D
RNA
Cell Type
HEPATOLOGY COMMUNICATIONS, 2021
Mouse
Kidney-Intestine
Acute Kidney Injury
9.54K
Spot
17.9K
Gene
5
ROI
Visium
2D
RNA
Cell Type
JASN, 2021
Human
Skin
Squamous cell carcinoma
10.4K
Spot
19.9K
Gene
4
ROI
Visium
2D
RNA
Cell Type
NATURE BIOTECHNOLOGY, 2021
Human
Intestine-Ileum
Normal
13.1K
Spot
20.3K
Gene
4
ROI
Visium
2D
RNA
Cell Type
NATURE BIOTECHNOLOGY, 2021
Mouse
Brain-Postnatal Brain
Normal
3.02K
Spot
18.3K
Gene
1
ROI
Visium
2D
RNA
Cell Type
NATURE COMMS, 2021
Mouse
Brain
Inflammatory
15.7K
Spot
21.3K
Gene
6
ROI
Visium
2D
RNA
Cell Type
NATURE NEUROSCIENCE, 2021
Mouse
Bone
Normal
1.67K
Spot
16.9K
Gene
4
ROI
Visium
2D
RNA
Cell Type
PNAS, 2021
Mouse
Embryo
Normal
57.5K
Cell
351
Gene
182
ROI
seqFISH
2D
RNA
Cell Type
NATURE BIOTECHNOLOGY, 2021
Human
Kidney
Normal
790
Spot
14.6K
Gene
4
ROI
Visium
2D
RNA
Cell Type
NATURE COMMS, 2021
Human
Colon
Colorectal Cancer
258K
Cell
57
Marker
140
ROI
CODEX
2D
Protein
Cell Type
CELL, 2020
Mouse
Embryo
Normal
24.8K
Spot
23.2K
Gene
15
ROI
DBiT-seq
2D
RNA
Cell Type
CELL, 2020
Human
Breast
Breast Cancer
480K
Cell
37
Marker
548
ROI
IMC
2D
Protein
Cell Type
NATURE CANCER, 2020
Human
Breast
Breast Cancer
433K
Cell
35
Marker
365
ROI
IMC
2D
Protein
Cell Type
NATURE, 2020
Human
Breast
Breast Cancer
856K
Cell
33
Marker
381
ROI
IMC
2D
Protein
Cell Type
NATURE, 2020
Human
Colon
Colon Cancer
63.7K
Cell
35
Marker
4
ROI
MIBI
2D
Protein
Cell Type
NATURE BIOTECHNOLOGY, 2020
Mouse
Brain
Alzheimer
10.3K
Spot
40.8K
Gene
20
ROI
Visium
2D
RNA
Cell Type
CELL, 2020
Human
Skin
Squamous Cell Carcinoma
8.67K
Spot
17.3K
Gene
12
ROI
Visium
2D
RNA
Cell Type
CELL, 2020
Mouse
Brain-Hippocampus
Alzheimer
15.1K
Spot
22.7K
Gene
24
ROI
Visium
2D
RNA
Cell Type
ISCIENCE, 2020
Mouse
Brain-Olfactory Bulb
Alzheimer
5.06K
Spot
20.5K
Gene
24
ROI
Visium
2D
RNA
Cell Type
ISCIENCE, 2020
Human
Breast
Breast Cancer
30.6K
Spot
21.5K
Gene
68
ROI
Visium
2D
RNA
Cell Type
NATURE BIOMEDICAL ENGINEERING, 2020
Mouse
Brain
Normal
34.1K
Spot
19.3K
Gene
75
ROI
Visium
2D
RNA
Cell Type
SCIENCE ADVANCES, 2020
Human
Colon
Colon Cancer
1.93M
Cell
8
Marker
3
ROI
CyCIF
2D
Protein
Cell Type
NATURE CELL BIOLOGY, 2020
Human
Tonsil
Normal
134K
Cell
14
Marker
119
ROI
CyCIF
2D
Protein
Cell Type
NATURE PROTOCOLS, 2019
Human
Lung-Mixed
Lung Cancer
167K
Cell
28
Marker
397
ROI
CyCIF
2D
Protein
Cell Type
NATURE PROTOCOLS, 2019
Human
Tonsil
Normal
288K
Cell
26
Marker
221
ROI
CyCIF
2D
Protein
Cell Type
NATURE PROTOCOLS, 2019
Human
Heart
Normal
3.11K
Spot
22.2K
Gene
19
ROI
Visium
2D
RNA
Cell Type
CELL, 2019
Human
Pancreas
Diabetes (Type 1 Diabetes)
1.78M
Cell
36
Marker
845
ROI
IMC
2D
Protein
Cell Type
CELL METABOLISM, 2019
Human
Brain
Multiple sclerosis
20.4K
Cell
15
Marker
28
ROI
IMC
2D
Protein
Cell Type
ELIFE, 2019
Human
Bone-U2-Cell
Osteosarcoma
1.37K
Cell
12.9K
Gene
3
ROI
MERFISH
2D
RNA
Cell Type
PNAS, 2019
Human
Joint
Arthritic joint
6.24K
Spot
15.8K
Gene
18
ROI
Visium
2D
RNA
Cell Type
SCIENTIFIC REPORTS, 2019
Mouse
Brain-Hippocampal
Normal
76.2K
Cell
98
Gene
28
ROI
pciSeq
2D
RNA
Cell Type
NATURE METHODS, 2019
Mouse
Brain-Olfactory Bulb
Normal
2.05K
Cell
10K
Gene
7
ROI
seqFISH
2D
RNA
Cell Type
NATURE, 2019
Mouse
Brain-Cortex
Normal
913
Cell
10K
Gene
8
ROI
seqFISH
2D
RNA
Cell Type
NATURE, 2019
Human
Spinal Cord
Amyotrophic lateral sclerosis
64.3K
Spot
20.4K
Gene
80
ROI
Visium
2D
RNA
Cell Type
SCIENCE, 2019
Mouse
Spleen
Systemic Autoimmune (Lupus)
701K
Cell
29
Marker
9
ROI
CODEX
2D
Protein
Cell Type
CELL, 2018
Human
Pancreas
Pancreatic Cancer
158K
Cell
24
Marker
82
ROI
CyCIF
2D
Protein
Cell Type
ELIFE, 2018
Human
Mixed
Cancer (TMA mix of various cancers)
180K
Cell
24
Marker
39
ROI
CyCIF
2D
Protein
Cell Type
ELIFE, 2018
Human
Brain
Glioblastoma
349K
Cell
29
Marker
138
ROI
CyCIF
2D
Protein
Cell Type
ELIFE, 2018
Mouse
Brain-Hypothalamic Preoptic
Normal
73.7K
Cell
161
Gene
1
ROI
MERFISH
3D
RNA
Cell Type
SCIENCE, 2018
Human
Breast
Breast Cancer (Triple negative breast cancer)
198K
Cell
39
Marker
40
ROI
MIBI
2D
Protein
Cell Type
CELL, 2018
Mouse
Brain-Somatosensory cortex
Normal
4.84K
Cell
33
Gene
11
ROI
osmFISH
2D
RNA
Cell Type
NATURE METHODS, 2018
Mouse
Brain-Medial Prefrontal Cortex
Normal
5.04K
Cell
166
Gene
4
ROI
STARmap
2D
RNA
Cell Type
SCIENCE, 2018
Mouse
Brain-Visual Cortex
Normal
32.8K
Cell
28
Gene
1
ROI
STARmap
3D
RNA
Cell Type
SCIENCE, 2018
Human
Lymph Node
Cutaneous malignant melanoma (Stage 3)
2.34K
Spot
16.6K
Gene
8
ROI
Visium
2D
RNA
Cell Type
CANCER RESEARCH, 2018
Human
Prostate
Prostate Cancer
5.86K
Spot
17.4K
Gene
12
ROI
Visium
2D
RNA
Cell Type
NATURE COMMS, 2018
Human
Heart
Normal
1.89K
Spot
13.5K
Gene
10
ROI
Visium
2D
RNA
Cell Type
SCIENTIFIC REPORTS, 2017
Mouse
Brain-Hippocampus
Normal
3.58K
Cell
249
Gene
30
ROI
seqFISH
2D
RNA
Cell Type
NEURON, 2016